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Abstract. The hydrology of thawing permafrost affects the fate of the vast amount of permafrost carbon due to its controls on waterlogging, redox status, and transport. However, regional mapping of soil water storage in the soil layer that experiences the annual freeze-thaw cycle above permafrost, known as the active layer, remains a formidable challenge over remote arctic regions. This study shows that Interferometric Synthetic Aperture Radar (InSAR) observations can be used to estimate the amount of soil water originating from the active layer seasonal thaw. Our ALOS InSAR results, validated by in situ observations, show that the thickness of the soil water that experiences the annual freeze-thaw cycle ranges from 0 to 75 cm in a 60-by-100-km area near the Toolik Field Station on the North Slope of Alaska. Notably, the spatial distribution of the soil water correlates with surface topography and land vegetation cover types. We found that pixel-mismatching of the topographic map and radar images is the primary error source in the Toolik ALOS InSAR data. The amount of pixel misregistration, the local slope, and the InSAR perpendicular baseline influence the observed errors in InSAR Line-Of-Sight (LOS) distance measurements non-linearly. For most of the study area with a percent slope of less than 5%, the LOS error from pixel misregistration is less than 1 cm, translating to less than 14 cm of error in the soil water estimates. 

Sunlight breaks down dissolved organic matter (DOM) in lakes and streams to produce carbon dioxide (a greenhouse gas). The efficiency of this process depends on light exposure, the aromatic content of DOM (i.e., Ar–C), and dissolved iron (Fe). 

Thaw depth was measured using a steel probe in the Imnavait Creek watershed, near Toolik Lake, Alaska. The thaw grid includes measurements made from the valley bottom (on both sides of the stream), up the hillslope. The thaw grid is near Imnavait water tracks 7 and 8, and measurements have been made from the 2003 season until present. At least two surveys are conducted each summer, on 2 July and on 11 August (plus or minus a couple of days on either side of those dates). 

Data file containing biogeochemical data of water samples collected in Imnavait Creek, North Slope of Alaska. Sample site descriptors include a unique assigned number (sortchem), site, date, time, depth, distance (downstream), and elevation. Values of variables measured in the field include temperature, conductivity, pH. Chemical analysis for samples include alkalinity, dissolved organic carbon (DOC), inorganic and total dissolved nutrients particulate carbon, nitrogen, and phosphorus, cations and anions. 

The dataset reports values for bacterial production in Toolik Lake catchment series of lakes (I-series), Alaska at depths of 1m for the time period 2000-2021. The method used is the 14-C-Leucine incorporation into bacterial cells. 

The dataset reports values for bacterial production in Toolik Lake, Alaska at depths of 3m and 16m for the time period 2003-2019. The method used is the 14-C-Leucine incorporation into bacterial cells. 

Abstract Microorganisms drive many aspects of organic carbon cycling in thawing permafrost soils, but the compositional trajectory of the post-thaw microbiome and its metabolic activity remain uncertain, which limits our ability to predict permafrost–climate feedbacks in a warming world. Using quantitative metabarcoding and metagenomic sequencing, we determined relative and absolute changes in microbiome composition and functional gene abundance during thaw incubations of wet sedge tundra collected from northern Alaska, USA. Organic soils from the tundra active-layer (0–50 cm), transition-zone (50–70 cm), and permafrost (70+ cm) depths were incubated under reducing conditions at 4 °C for 30 days to mimic an extended thaw duration. Following extended thaw, we found that iron (Fe)-cycling Gammaproteobacteria, specifically the heterotrophic Fe(III)-reducing Rhodoferax sp. and chemoautotrophic Fe(II)-oxidizing Gallionella sp., increased by 3–5 orders of magnitude in absolute abundance within the transition-zone and permafrost microbiomes, accounting for 65% of community abundance. We also found that the abundance of genes for Fe(III) reduction (e.g., MtrE) and Fe(II) oxidation (e.g., Cyc1) increased concurrently with genes for benzoate degradation and pyruvate metabolism, in which pyruvate is used to generate acetate that can be oxidized, along with benzoate, to CO2 when coupled with Fe(III) reduction. Gene abundance for CH4 metabolism decreased following extended thaw, suggesting dissimilatory Fe(III) reduction suppresses acetoclastic methanogenesis under reducing conditions. Our genomic evidence indicates that microbial carbon degradation is dominated by iron redox metabolism via an increase in gene abundance associated with Fe(III) reduction and Fe(II) oxidation during initial permafrost thaw, likely increasing microbial respiration while suppressing methanogenesis in wet sedge tundra. 

Leachates of dissolved organic carbon (DOC) from permafrost soils were prepared from soils collected from the North Slope of Alaska in 2018 and 2022. Soil leachates were then either kept in the dark or exposed to light from LEDs at 305 nm (UV) and 405 nm (visible), and then inoculated with native microbial communities and incubated. At the start of the biological incubations, single replicates of the DOC after dark or light treatment and inoculation were assigned accession numbers and analyzed for 14C and 13C at the National Ocean Sciences Accelerator Mass Spectrometry (NOSAMS) facility. At the end of the biological incubations, duplicates of the dissolved inorganic carbon (DIC) in those waters were assigned accession numbers and analyzed for 14C and 13C at the NOSAMS facility. 

Dissolved organic carbon (DOC) was leached from permafrost soils near the Toolik Field Station in the Alaskan Arctic. Daily rates of sunlight absorption by chromophoric dissolved organic matter (CDOM) from the permafrost soil leachates over the water column depth of an arctic headwater stream were quantified.